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Oncomap Variants

Batch Information

  • Submitted By: Mayank Choudhary, Ben Ainscough
  • Submitter Affiliation: McDonnell Genome Institute, Washington University School of Medicine
  • Submission Date: 14-JUL-2015
  • Reference URL: Visit
  • Last Review Date: 14-JUL-2015
  • Total Variants: 167
  • View Variants: Oncomap Variants

Justification for Inclusion

Oncomap is a listing of 471 variants with known and established importance in cancer, many of which are known to predict response or resistance to targeted therapies. The panel is used as a diagnostic test to identify tumorigenic mutations in clinical cases by MacConnaill et al. in their manuscript in the Journal of Molecular Diagnostics. Many of these mutations overlap with mutations already existing in DoCM and this panel adds further credibility to their importance. As only the gene and amino acid were listed in the publication, many fields were filled in by manual curation. The transcript was chosen such that the amino acid change resembles the variant outlined in the cited paper. In the event that there were multiple transcripts that included this variant, the longest transcript was chosen. Associated diseases and other relevant sources were identified by searching PubMed for the gene and amino acid change.

Submission Status

Chr Start Stop Ref Var DOID Pubmed Id Status Message
3 41266076 41266099 TGGCAGCAACAGTCTTACCTGGAC - DOID:1909 25157968 included
3 41266097 41266097 G A DOID:3748 25157968 included
3 41266097 41266097 G A DOID:2871 25157968 included
3 41266097 41266097 G C DOID:1909 25157968 included
3 41266097 41266097 G T DOID:0050902 25157968 included
3 41266097 41266097 G T DOID:3840 25157968 included
3 41266101 41266101 C G DOID:1540 25157968 included
3 41266098 41266098 A C DOID:1909 25157968 included
3 41266098 41266098 A G DOID:1909 25157968 included
3 41266098 41266098 A T DOID:2871 25157968 included
3 41266101 41266101 C A DOID:2871 25157968 included
3 41266101 41266101 C G DOID:1319 25157968 included
3 41266112 41266112 T G DOID:1540 25157968 included
3 41266113 41266113 C A DOID:10534 25157968 included
3 41266113 41266113 C G DOID:2394 25157968 included
3 41266113 41266113 C G DOID:3910 25157968 included
3 41266121 41266121 A C DOID:162 25157968 included
3 41266121 41266121 A G DOID:10534 25157968 included
3 41266121 41266121 A T DOID:162 25157968 included
3 41266122 41266122 C T DOID:1909 25157968 included
3 41266136 41266136 T C DOID:0050891 25157968 included
3 41266136 41266136 T G DOID:0050891 25157968 included
3 41266103 41266103 G C DOID:3840 25157968 included
3 41266103 41266103 G C DOID:5374 25157968 included
3 41266137 41266137 C T DOID:0050891 25157968 included
3 178916876 178916876 G A DOID:1612 25157968 included
3 178916876 178916876 G A DOID:9256 25157968 included
3 178921553 178921553 T A DOID:9256 25157968 included
3 178921553 178921553 T G DOID:1612 25157968 included
3 178921553 178921553 T G DOID:9256 25157968 included
3 178927980 178927980 T C DOID:9256 25157968 included
3 178936074 178936074 C G DOID:1612 25157968 included
3 178936082 178936082 G C DOID:3908 25157968 included
3 178936091 178936091 G C DOID:11934 25157968 included
3 41266103 41266103 G A DOID:3840 25157968 included
3 41266103 41266103 G A DOID:5374 25157968 included
3 41266104 41266104 G A DOID:2394 25157968 included
3 41266104 41266104 G T DOID:1909 25157968 included
3 41266112 41266112 T C DOID:10534 25157968 included
3 41266113 41266113 C T DOID:2394 25157968 included
3 41266136 41266136 T G DOID:1319 25157968 included
3 41266137 41266137 C A DOID:1909 25157968 included
3 41266137 41266137 C G DOID:0050891 25157968 included
3 178921553 178921553 T A DOID:1612 25157968 included
3 178927980 178927980 T C DOID:1612 25157968 included
3 178936082 178936082 G A DOID:1612 25157968 included
3 178936091 178936091 G A DOID:1612 25157968 included
3 178936092 178936092 A C DOID:1612 25157968 included
4 55152093 55152093 A T DOID:9253 25157968 included
3 178936093 178936093 G T DOID:1612 25157968 included
3 178936094 178936094 C A DOID:1324 25157968 included
3 178936092 178936092 A G DOID:9256 25157968 included
3 178936092 178936092 A G DOID:1909 25157968 included
3 178936093 178936093 G C DOID:1612 25157968 included
3 178938860 178938860 A C DOID:1612 25157968 included
3 178952007 178952007 A G DOID:1612 25157968 included
3 178952074 178952074 G A DOID:9256 25157968 included
3 178952074 178952074 G T DOID:9256 25157968 included
3 178952084 178952084 C T DOID:0050866 25157968 included
3 178952085 178952085 A T DOID:9256 25157968 included
3 178952090 178952090 G C DOID:0050866 25157968 included
4 1803564 1803564 C T DOID:3910 25157968 included
4 1803568 1803568 C G DOID:4007 25157968 included
4 1806089 1806089 G T DOID:4007 25157968 included
4 1806092 1806092 A T DOID:4007 25157968 included
4 1806099 1806099 A G DOID:4007 25157968 included
4 1807889 1807889 A C DOID:4007 25157968 included
4 1808331 1808331 G T DOID:4007 25157968 included
4 55141036 55141036 T A DOID:9253 25157968 included
4 55152089 55152094 AGAGAC - DOID:9253 25157968 included
4 55152092 55152092 G T DOID:9253 25157968 included
4 55152092 55152093 GA AT DOID:9253 25157968 included
4 55152092 55152100 GACATCATG - DOID:9253 25157968 included
4 55152095 55152106 ATCATGCATGAT - DOID:9253 25157968 included
4 55561764 55561764 G A DOID:162 25157968 included
4 55593603 55593603 T A DOID:9253 25157968 included
4 55593603 55593603 T C DOID:9253 25157968 included
4 55593609 55593611 GTT - DOID:1909 25157968 included
4 55593610 55593610 T A DOID:1909 25157968 included
4 55593610 55593610 T C DOID:1909 25157968 included
4 55593610 55593610 T G DOID:9253 25157968 included
4 55593613 55593613 T A DOID:9253 25157968 included
4 55593613 55593613 T G DOID:9253 25157968 included
4 55593661 55593661 T C DOID:1909 25157968 included
4 55594258 55594258 T C DOID:9253 25157968 included
4 55595519 55595519 C T DOID:9253 25157968 included
4 55599320 55599320 G C DOID:9253 25157968 included
4 55599320 55599320 G T DOID:9253 25157968 included
4 55599340 55599340 T A DOID:9253 25157968 included
4 55599340 55599340 T G DOID:9253 25157968 included
4 55599348 55599348 T C DOID:1909 25157968 included
4 55602694 55602694 G A DOID:9253 25157968 included
5 67589138 67589138 G A DOID:162 25157968 included
5 67589138 67589138 G C DOID:162 25157968 included
5 67589552 67589552 GAA - DOID:162 25157968 included
5 67589618 67589618 C T DOID:162 25157968 included
5 67591085 67591085 G T DOID:162 25157968 included
5 67591085 67591102 GACAAACGTATGAACAGC - DOID:162 25157968 included
5 67591097 67591097 A G DOID:162 25157968 included
5 67591099 67591099 C A DOID:162 25157968 included
5 67591099 67591099 C G DOID:162 25157968 included
5 67591133 67591135 ACG - DOID:162 25157968 included
5 67591249 67591249 TGG - DOID:162 25157968 included
7 55259515 55259516 TG GT DOID:3908 25157968 included
5 112173917 112173917 C T DOID:9256 25157968 included
5 112174631 112174631 C T DOID:9256 25157968 included
5 112174631 112174631 C T DOID:3910 25157968 included
5 112175219 112175229 AAGATTGGAAC - DOID:162 25157968 included
5 112175219 112175238 AAGATTGGAACTAGGTCAGC - DOID:162 25157968 included
5 112175303 112175303 C T DOID:9256 25157968 included
5 112175390 112175390 C T DOID:9256 25157968 included
5 112175423 112175423 C T DOID:9256 25157968 included
5 112175426 112175426 G T DOID:9256 25157968 included
5 112175576 112175576 C T DOID:9256 25157968 included
7 116417463 116417463 C T DOID:4451 25157968 included
7 55242423 55242423 G A DOID:3908 25157968 included
7 55242428 55242428 C T DOID:3748 25157968 included
5 112175639 112175639 C T DOID:9256 25157968 included
5 112175687 112175691 GGACC - DOID:162 25157968 included
5 112175960 112175967 ATTGATTC - DOID:162 25157968 included
5 149433644 149433644 A C DOID:162 25157968 included
5 149433644 149433644 A T DOID:162 25157968 included
5 149433645 149433645 T A DOID:162 25157968 included
5 149433645 149433645 T C DOID:162 25157968 included
5 149433646 149433646 A G DOID:162 25157968 included
5 149453044 149453044 A G DOID:162 25157968 included
5 149453044 149453044 A T DOID:162 25157968 included
7 55241707 55241707 G T DOID:3908 25157968 included
7 55241708 55241708 G A DOID:3908 25157968 included
7 55241708 55241708 G C DOID:3908 25157968 included
7 55242428 55242428 C T DOID:3908 25157968 included
7 55242430 55242430 G A DOID:3908 25157968 included
7 55242433 55242433 G A DOID:10283 25157968 included
7 55242433 55242433 G A DOID:3908 25157968 included
7 55242455 55242455 T C DOID:3908 25157968 included
7 55242464 55242464 A G DOID:5520 25157968 included
7 55242466 55242466 G A DOID:3908 25157968 included
7 55242478 55242478 G C DOID:3910 25157968 included
7 55259514 55259515 CT AG DOID:3908 25157968 included
1 115256528 115256528 T A DOID:1909 25157968 included
1 115256528 115256529 TT CA DOID:1909 25157968 included
7 55242478 55242478 G C DOID:3908 25157968 included
7 55242485 55242485 C A DOID:3908 25157968 included
7 55242487 55242487 C T DOID:3908 25157968 included
7 55242511 55242511 G A DOID:3908 25157968 included
7 55242511 55242511 G T DOID:3908 25157968 included
7 55259515 55259515 T A DOID:3908 25157968 included
3 10183797 10183797 T A DOID:4467 25157968 included
3 41266101 41266101 C A DOID:0050902 25157968 included
3 41266101 41266101 C G DOID:2394 25157968 included
3 41266104 41266104 G A DOID:684 25157968 included
3 41266104 41266104 G T DOID:3840 25157968 included
7 55249005 55249005 G T DOID:1107 25157968 included
7 55249005 55249005 G T DOID:3908 25157968 included
3 41266122 41266122 C G DOID:162 25157968 included
7 55259515 55259515 T G DOID:3908 25157968 included
3 178952085 178952085 A G DOID:162 25157968 included
3 178952090 178952090 G A DOID:9256 25157968 included
7 55249020 55249020 A G DOID:3908 25157968 included
7 55249071 55249071 C T DOID:3908 25157968 included
7 55249131 55249131 G A DOID:0050865 25157968 included
7 55259514 55259514 C A DOID:3908 25157968 included
4 55152092 55152103 GACATCATGCAT - DOID:9253 25157968 included
4 55152104 55152104 G T DOID:9253 25157968 included
4 55593609 55593609 G A DOID:2226 25157968 included
4 55593613 55593613 T A DOID:1909 25157968 included
4 55594221 55594221 A G DOID:9253 25157968 included
7 116417464 116417464 A G DOID:4451 25157968 included
7 116423413 116423413 T C DOID:4451 25157968 included
7 116423414 116423414 A G DOID:4451 25157968 included
7 116423474 116423474 T C DOID:4451 25157968 included
7 140453121 140453121 C T DOID:1909 25157968 included
7 140453121 140453122 CT AA DOID:1909 25157968 included
7 140453132 140453132 T A DOID:1909 25157968 included
7 140453132 140453132 T G DOID:1909 25157968 included
7 140453132 140453134 TTT - DOID:1909 25157968 included
7 140453134 140453134 T C DOID:1909 25157968 included
7 140453135 140453136 CA AT DOID:1909 25157968 included
7 140453135 140453136 CA TT DOID:1909 25157968 included
7 140453135 140453136 CA TT DOID:219 25157968 included
7 55249130 55249130 G A DOID:0050865 25157968 included
7 140453136 140453136 A G DOID:1909 25157968 included
7 140453136 140453136 A T DOID:1909 25157968 included
12 25398282 25398282 C A DOID:9256 25157968 included
7 140453136 140453136 A T DOID:219 25157968 included
7 140453136 140453137 AC CT DOID:1909 25157968 included
7 140453136 140453137 AC TT DOID:1909 25157968 included
7 140453137 140453137 C A DOID:1909 25157968 included
7 140453137 140453137 C G DOID:1909 25157968 included
7 140453137 140453137 C T DOID:1909 25157968 included
7 140453139 140453139 G A DOID:1909 25157968 included
7 140453145 140453145 A C DOID:1909 25157968 included
7 140453145 140453145 A T DOID:1909 25157968 included
7 140453145 140453146 AG GA DOID:1909 25157968 included
7 140453146 140453146 G C DOID:1909 25157968 included
7 140453149 140453149 C G DOID:1909 25157968 included
7 140453149 140453149 C G DOID:9256 25157968 included
7 140453150 140453150 A C DOID:1909 25157968 included
7 140453150 140453150 A T DOID:1909 25157968 included
7 140453151 140453151 A G DOID:1909 25157968 included
7 140453152 140453152 A G DOID:1909 25157968 included
7 140453153 140453153 A T DOID:1909 25157968 included
7 140453154 140453154 T A DOID:1909 25157968 included
7 140453154 140453154 T C DOID:1909 25157968 included
7 140453154 140453154 T C DOID:9256 25157968 included
7 140453159 140453159 T C DOID:162 25157968 included
7 140453161 140453161 T C DOID:1909 25157968 included
7 140453174 140453174 G C DOID:162 25157968 included
7 140453174 140453174 G T DOID:162 25157968 included
7 140453175 140453175 T G DOID:162 25157968 included
7 140453179 140453179 C T DOID:1909 25157968 included
7 140453193 140453193 T C DOID:8552 25157968 included
7 140453193 140453193 T C DOID:1909 25157968 included
7 140481397 140481397 C A DOID:1909 25157968 included
7 140481402 140481402 C A DOID:162 25157968 included
12 25380277 25380277 G T DOID:9256 25157968 included
7 140481402 140481402 C G DOID:3910 25157968 included
7 140481402 140481402 C T DOID:1909 25157968 included
12 25398262 25398262 C G DOID:0001816 25157968 included
4 55599321 55599321 A T DOID:9254 25157968 included
5 112175207 112175207 G T DOID:9256 25157968 included
7 55241707 55241707 G A DOID:3908 25157968 included
12 25398281 25398281 C T DOID:9256 25157968 included
7 140481417 140481417 C A DOID:1612 25157968 included
12 25380276 25380276 T A DOID:9256 25157968 included
13 48955550 48955550 C T DOID:162 25157968 included
17 37880997 37880997 G A DOID:162 25157968 included
7 140481402 140481403 CC GA DOID:1909 25157968 included
7 140481403 140481403 C G DOID:1909 25157968 included
19 1223059 1223059 G A DOID:162 25157968 included
19 17945696 17945696 C T DOID:9952 25157968 included
7 140481403 140481403 C T DOID:1909 25157968 included
3 41266040 41266040 G A DOID:1909 25157968 included
3 41266064 41266064 G A DOID:1909 25157968 included
7 140481411 140481411 C A DOID:3908 25157968 included
7 140481411 140481411 C G DOID:1909 25157968 included
7 140481411 140481411 C T DOID:1909 25157968 included
7 140481412 140481412 C T DOID:2394 25157968 included
7 140481417 140481417 C T DOID:1040 25157968 included
1 115258745 115258745 C T DOID:10534 25157968 included
7 140481418 140481418 C T DOID:1909 25157968 included
7 140481478 140481478 G A DOID:1909 25157968 included
8 38282209 38282209 G T DOID:162 25157968 included
8 38285938 38285938 G A DOID:162 25157968 included
8 128750632 128750632 C T DOID:162 25157968 included
8 128750639 128750639 C T DOID:162 25157968 included
8 128750681 128750681 C T DOID:162 25157968 included
8 128750693 128750693 C T DOID:162 25157968 included
8 128750765 128750765 A C DOID:162 25157968 included
8 128751241 128751241 C G DOID:162 25157968 included
9 5073770 5073770 G T DOID:4971 25157968 included
9 21971017 21971017 G A DOID:1909 25157968 included
9 21971028 21971028 C T DOID:162 25157968 included
9 21971029 21971029 C T DOID:162 25157968 included
9 21971036 21971036 C A DOID:162 25157968 included
9 21971096 21971096 C A DOID:162 25157968 included
9 21971108 21971108 C A DOID:162 25157968 included
9 21971111 21971111 G A DOID:162 25157968 included
9 21971120 21971120 G A DOID:1909 25157968 included
9 133738356 133738356 G C DOID:8552 25157968 included
9 133738364 133738364 A T DOID:8552 25157968 included
9 133747540 133747540 T G DOID:8552 25157968 included
3 41266067 41266117 GTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGT - DOID:1909 25157968 included
9 21971153 21971153 C A DOID:162 25157968 included
9 21971177 21971177 C A DOID:162 25157968 included
9 21971186 21971186 G A DOID:162 25157968 included
9 80409488 80409488 T A DOID:6039 25157968 included
9 80409488 80409488 T G DOID:6039 25157968 included
9 80409488 80409489 TG AA DOID:6039 25157968 included
9 133738330 133738330 A G DOID:8552 25157968 included
9 133738342 133738342 C G DOID:8552 25157968 included
1 115256529 115256529 T G DOID:1909 25157968 included
1 115256529 115256530 TG CT DOID:1909 25157968 included
9 133738349 133738349 G A DOID:8552 25157968 included
1 115256530 115256530 G A DOID:1909 25157968 included
1 115256530 115256530 G C DOID:1909 25157968 included
3 41266068 41266068 T C DOID:1909 25157968 included
1 115258730 115258730 C T DOID:1909 25157968 included
1 115258744 115258744 C A DOID:162 25157968 included
1 115258744 115258744 C G DOID:1909 25157968 included
9 133738357 133738357 T C DOID:9952 25157968 included
9 133738356 133738356 G T DOID:8552 25157968 included
1 115258744 115258744 C T DOID:1909 25157968 included
1 115258745 115258745 C A DOID:1909 25157968 included
1 115258745 115258745 C G DOID:1909 25157968 included
9 133738357 133738357 T C DOID:8552 25157968 included
9 133738358 133738358 A T DOID:8552 25157968 included
9 133738363 133738363 G A DOID:8552 25157968 included
1 115256528 115256528 T G DOID:1909 25157968 included
1 115256529 115256529 T A DOID:1909 25157968 included
1 115256529 115256529 T C DOID:1909 25157968 included
1 115258747 115258747 C A DOID:9119 25157968 included
1 115258747 115258747 C G DOID:9256 25157968 included
1 115258747 115258747 C T DOID:9119 25157968 included
1 115258748 115258748 C A DOID:9256 25157968 included
1 115258748 115258748 C G DOID:8552 25157968 included
1 115258748 115258748 C G DOID:9256 25157968 included
1 115258748 115258748 C T DOID:9256 25157968 included
2 209113112 209113112 C T DOID:3069 25157968 included
2 209113113 209113113 G A DOID:3069 25157968 included
2 209113113 209113113 G T DOID:3069 25157968 included
3 10183772 10183772 C T DOID:162 25157968 included
3 10183785 10183785 T C DOID:162 25157968 included
3 10191480 10191480 T A DOID:4467 25157968 included
3 10191488 10191488 C T DOID:4467 25157968 included
3 10191506 10191506 C T DOID:4467 25157968 included
3 37067240 37067240 T A DOID:3717 25157968 included
3 37067240 37067240 T A DOID:3910 25157968 included
9 133748283 133748283 C T DOID:9952 25157968 included
9 133748283 133748283 C T DOID:8552 25157968 included
9 133748290 133748290 C A DOID:8552 25157968 included
9 133748290 133748290 C G DOID:8552 25157968 included
9 133748391 133748391 T C DOID:8552 25157968 included
9 133748403 133748403 A G DOID:8552 25157968 included
9 133748414 133748414 T G DOID:8552 25157968 included
9 133750356 133750356 A G DOID:8552 25157968 included
10 43609078 43609104 TTCCCTGAGGAGGAGAAGTGCTTCTGC - DOID:3973 25157968 included
10 43609940 43609940 A G DOID:3973 25157968 included
10 43609942 43609947 GAGCTG - DOID:3973 25157968 included
10 43609948 43609948 T C DOID:3973 25157968 included
10 43609949 43609949 G A DOID:162 25157968 included
10 43609950 43609950 C G DOID:3973 25157968 included
10 43613840 43613840 G C DOID:162 25157968 included
10 43615568 43615569 GC TT DOID:3973 25157968 included
10 43615613 43615624 GATGTTTATGAA - DOID:3973 25157968 included
10 43617416 43617416 T C DOID:3973 25157968 included
10 89692904 89692904 C G DOID:0050866 25157968 included
10 89692904 89692904 C T DOID:1319 25157968 included
10 89692905 89692905 G A DOID:162 25157968 included
10 89711899 89711899 C T DOID:1319 25157968 included
10 89711900 89711900 G A DOID:1319 25157968 included
10 89717675 89717675 C T DOID:162 25157968 included
10 89720852 89720852 C T DOID:1319 25157968 included
10 123247577 123247577 A T DOID:2871 25157968 included
10 123274777 123274777 A G DOID:2871 25157968 included
10 123274794 123274794 T C DOID:2871 25157968 included
10 123274803 123274803 G C DOID:2871 25157968 included
10 123279503 123279503 T C DOID:2871 25157968 included
10 123279677 123279677 G C DOID:2871 25157968 included
11 533873 533873 C A DOID:162 25157968 included
11 533873 533873 C G DOID:162 25157968 included
11 533873 533874 CT AC DOID:162 25157968 included
11 533873 533874 CT TC DOID:162 25157968 included
11 533874 533874 T A DOID:3151 25157968 included
11 533874 533874 T C DOID:162 25157968 included
11 533874 533874 T G DOID:162 25157968 included
11 533875 533875 G T DOID:1612 25157968 included
11 534285 534285 C A DOID:3284 25157968 included
11 534286 534286 C A DOID:162 25157968 included
11 534286 534286 C G DOID:1781 25157968 included
11 534286 534286 C T DOID:162 25157968 included
11 534288 534288 C A DOID:1909 25157968 included
11 534288 534288 C T DOID:1612 25157968 included
11 534289 534289 C A DOID:4007 25157968 included
11 534289 534289 C G DOID:9256 25157968 included
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DoCM by The McDonnell Genome Institute at Washington University School of Medicine is licensed under a Creative Commons Attribution 4.0 International License. Questions? Comments? Concerns? You can contact us here.